U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    zdhhc23a zinc finger DHHC-type palmitoyltransferase 23a [ Danio rerio (zebrafish) ]

    Gene ID: 100150190, updated on 11-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    zdhhc23aprovided by ZNC
    Official Full Name
    zinc finger DHHC-type palmitoyltransferase 23aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060526-38
    See related
    Ensembl:ENSDARG00000029039 AllianceGenome:ZFIN:ZDB-GENE-060526-38
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-137i24.2
    Summary
    Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum. Orthologous to human ZDHHC23 (zinc finger DHHC-type palmitoyltransferase 23). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (24279333..24302989)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (23775196..23799192)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene ATPase H+ transporting V1 subunit Aa Neighboring gene si:ch211-137i24.12 Neighboring gene cathepsin L, like Neighboring gene zinc finger protein 703

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables palmitoyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein-cysteine S-palmitoyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables protein-cysteine S-palmitoyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in peptidyl-L-cysteine S-palmitoylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in protein targeting to membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    palmitoyltransferase ZDHHC23-A; palmitoyltransferase ZDHHC23
    Names
    zinc finger DHHC domain-containing protein 23-A
    zinc finger DHHC-type containing 23a
    XP_009299703.1
    XP_009299704.1
    XP_021327278.1
    XP_021327279.1
    XP_021332135.1
    XP_021332136.1
    XP_021332137.1
    XP_021332138.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423837.1 → NP_001410766.1  palmitoyltransferase ZDHHC23-A

      Status: VALIDATED

      Source sequence(s)
      BX119902, GDQH01031119, GFIL01044031
      UniProtKB/TrEMBL
      A0A8M9Q9C3

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      24279333..24302989
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021476460.1 → XP_021332135.1  palmitoyltransferase ZDHHC23 isoform X1

      UniProtKB/Swiss-Prot
      F1QHM7
      UniProtKB/TrEMBL
      A0A8M9QEK5
      Conserved Domains (1) summary
      pfam01529
      Location:224 → 352
      zf-DHHC; DHHC palmitoyltransferase

    2. XM_021476461.1 → XP_021332136.1  palmitoyltransferase ZDHHC23 isoform X2

      Related
      ENSDARP00000113952.1, ENSDART00000143563.2
      Conserved Domains (1) summary
      pfam01529
      Location:224 → 352
      zf-DHHC; DHHC palmitoyltransferase

    3. XM_021476462.1 → XP_021332137.1  palmitoyltransferase ZDHHC23 isoform X3

      UniProtKB/TrEMBL
      A0A8M9PKZ1
      Related
      ENSDARP00000041904.6, ENSDART00000041905.6
      Conserved Domains (1) summary
      cl19890
      Location:126 → 271
      zf-DHHC; DHHC palmitoyltransferase

    4. XM_021476463.1 → XP_021332138.1  palmitoyltransferase ZDHHC23 isoform X4

      UniProtKB/TrEMBL
      A0A8M3AS87
      Conserved Domains (1) summary
      cl19890
      Location:126 → 314
      zf-DHHC; DHHC palmitoyltransferase

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394575.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      295862..319518
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021471603.1 → XP_021327278.1  palmitoyltransferase ZDHHC23 isoform X1

      UniProtKB/Swiss-Prot
      F1QHM7
      UniProtKB/TrEMBL
      A0A8M9QEK5
      Conserved Domains (1) summary
      pfam01529
      Location:224 → 352
      zf-DHHC; DHHC palmitoyltransferase

    2. XM_021471604.1 → XP_021327279.1  palmitoyltransferase ZDHHC23 isoform X2

      Conserved Domains (1) summary
      pfam01529
      Location:224 → 352
      zf-DHHC; DHHC palmitoyltransferase

    3. XM_009301428.3 → XP_009299703.1  palmitoyltransferase ZDHHC23 isoform X3

      UniProtKB/TrEMBL
      A0A8M9PKZ1
      Conserved Domains (1) summary
      cl19890
      Location:126 → 271
      zf-DHHC; DHHC palmitoyltransferase

    4. XM_009301429.3 → XP_009299704.1  palmitoyltransferase ZDHHC23 isoform X4

      UniProtKB/TrEMBL
      A0A8M3AS87
      Conserved Domains (1) summary
      cl19890
      Location:126 → 314
      zf-DHHC; DHHC palmitoyltransferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F1QHM7.3 GenPept UniProtKB/Swiss-Prot:F1QHM7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Tools